species:   Rhsol
pid:       PID1784
parent:    novel-milR-51
paralog:   
locus:     KB317696.1:4642186-4642247
matures:   ['UGCACAGACCAUGUAGAUAGUG', 'CGCUUCUUAUUUUCUUUAUGUACC']
srr:       SRR10747098
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.GCA_000334115.1_Rhisol_AG1IA_1.0_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Meng2021-lx.SRR10747098.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Meng2021-lx.SRR10747098.cram KB317696.1:4642186-4642247

97 out of bounds
53 alignments
25 proper strand
23 stranded perfect matches

 **************************          ************************ 
GCACGCUUCUUAUUUUCUUUAUGUACCUCUUUUCUCACGUGCACAGACCAUGUAGAUAGUGC
((((...((((((..(((...(((((............))))).)))..))).)))..))))
---------------------------------------UGCACAGACCAUGUAGAUAGUG- l=22 a=13 c
---CGCUUCUUAUUUUCUUUAUGUACC----------------------------------- l=24 a=0 c*
---------------------------------------UGCACAGACCAUGUAGAUAGUG- l=22 a=13 ma
---CGCUUCUUAUUUUCUUUAUGUACC----------------------------------- l=24 a=0 ma*

---------------------------------------UGCACAGACCAUGUAGAUAGU-- l=21 a=5 
---------------------------------------UGCACAGACCAUGUAGAUAGUG- l=22 a=13 (c,ma)
---------------------------------------UGCACAGACCAUGUAGAUAGUGC l=23 a=2 
-------------------------------------CGUGCACAGACCAUGUAGAUAG--- l=22 a=2 
-------------------------------------CGaGCACAGACCAUGUAGAUAG--- l=22 a=1 
-------------------------------------CGaGCACAGACCAUGUAGAUAGUG- l=24 a=1 
------------------------------------ACGUGCACAGACCAUGUAGAUAGU-- l=24 a=1 

mb-01011
ax-1001011
ku-01
ss-111110001100
fn-101
